2019
2018
1. Contini, D; Cugnata, F; Scagni, A. Social selection in higher education. Enrolment, dropout and timely degree attainment in Italy. High. Educ.: 2018; 75(5): 785–808
2. Origo, D; Tarantino, AG; Nonis, A; Vismara, L. Osteopathic manipulative treatment in chronic coccydynia: A case series. J. Bodywork Mov. Ther.: 2018; 22(2): 261–265
3. Partelli, S; Cirocchi, R; Rancoita, PMV; Muffatti, F; Andreasi, V; Crippa, S; Tamburrino, D; Falconi, M. A Systematic review and meta-analysis on the role of palliative primary resection for pancreatic neuroendocrine neoplasm with liver metastases. HPB: 2018; 20(3): 197-203 - Review
4. Vergara, P; Tung, R; Vaseghi, M; Brombin, C; Frankel, D; Di Biase, L; Nagashima, K; Tedrow, U; Tzou, WS; Sauer, WH; Mathuria, N; Nakahara, S; Vakil, K; Tholakanahalli, V; Bunch, TJ; Weiss, JP; Dickfeld, T; Vunnam, R; Lakireddy, D; Burkhardt, JD; Correra, A; Santangeli, P; Callans, D; Natale, A; Marchlinski, F; Stevenson, WG; Shivkumar, K; Della Bella, P. Successful ventricular tachycardia ablation in patients with electrical storm reduces recurrences and improves survival. Heart Rhythm: 2018; 15(1): 48-55
5. Esposito, A and Palmisano, A; Antunes, S; Colantoni, C; Rancoita, PMV; Vignale, D; Baratto, F; della Bella, P; Del Maschio, A; de Cobelli, F. Assessment of Remote Myocardium Heterogeneity in Patients with Ventricular Tachycardia Using Texture Analysis of Late Iodine Enhancement (LIE) Cardiac Computed Tomography (cCT) Images. Mol. Imaging Biol.: 2018; 20(5): 816–825
6. Di Mattei, VE; Carnelli, L; Taranto, P; Mazzetti, M; Rancoita, PMV; Bergamini, A; Petrone, M; Rabaiotti, E; Sarno, L; Candiani, M. Quality of life and chemotherapy: Predictive factors in a sample of gynaecological cancer patients. Recenti Prog. Med.: 2018; 109(3): 193-196
7. Di Mattei, VE; Carnelli, L; Bernardi, M; Bienati, R; Brombin, C; Cugnata, F; Rabaiotti, E; Zambetti, M; Sarno, L; Candiani, M; Gentilini, O. Coping mechanisms, psychological distress, and quality of life prior to cancer genetic counseling. Front. Psychol.: 2018; 9: 1218
8. Palmisano, A; Esposito, A; Rancoita, PMV; Di Chiara, A; Passoni, P; Slim, N; Campolongo, M; Albarello, L; Fiorino, C; Rosati, R; Del Maschio, A; De Cobelli, F. Could perfusion heterogeneity at dynamic contrast-enhanced MRI be used to predict rectal cancer sensitivity to chemoradiotherapy?. Clin. Radiol.: 2018; 73(10): 911.e1–911.e7
9. Escobar, G; Barbarossa, L; Barbiera, G; Norelli, M; Genua, M; Ranghetti, A; Plati, T; Camisa, B; Brombin, C; Cittaro, D; Annoni, A; Bondanza, A; Ostuni, R; Gentner, B and Naldini, L. Interferon gene therapy reprograms the leukemia microenvironment inducing protective immunity to multiple tumor antigens. Nat. Commun.: 2018; 9: 2896
10. Rancoita, PMV and Cugnata, F and Gibertoni Cruz, AL; Borroni, E; Hoosdally, SJ; Walker, TM; Grazian, C; Davies, TJ; Peto, TEA; Crook, DW; Fowler, PW and Cirillo, DM; for the CRyPTIC Consortium (Battaglia, S; Chiacchiaretta, M; De Filippo, M; Cabibbe, A). Validating a 14-drug microtiter plate containing bedaquiline and delamanid for large-scale research susceptibility testing of mycobacterium tuberculosis. Antimicrob. Agents Chemother.: 2018; 62(9): e00344-18
11. Gigliarano, C; Nonis, A; Briganti, A; Bonetti, M; Di Serio, C. Effect of the number of removed lymph nodes on prostate cancer recurrence and survival: Evidence from an observational study. BMC Bioinform.: 2018; 19(Suppl. 7): 200
12. Barcellini, L; Campisi, D; Castellotti, PF; Cugnata, F; Ferrara, G; Ferrarese, M; Murgia, N; Repossi, A; Cirillo, DM; Codecasa, LR. Latent tuberculous infection among foreign-born individuals applying to shelters in the metropolitan area of Milan. Int. J. Tuberc. Lung Dis.: 2018; 22(10): 1160-1165
13. Martoni, RM; Rancoita, PMV; De Filippis, R; Di Serio, C; Brombin, C. Exploring and integrating discrete and dimensional approaches while inducing negative emotional states. J. Gen. Psychol.: 2018; 145(3): 238-265
14. Cugnata, F; Martoni, RM; Ferrario, M; Di Serio, C; Brombin, C. Modeling physiological responses induced by an emotion recognition task using latent class mixed models. PLoS ONE: 2018; 13(11): e0207123
15. Vecchio, F and Lo Buono, N; Stabilini, A; Nigi, L; Dufort, MJ; Geyer, S; Rancoita, PM; Cugnata, F; Mandelli, A; Valle, A; Leete, P; Mancarella, F; Linsley, PS; Krogvold, L; Herold, KC; Elding Larsson, H; Richardson, SJ; Morgan, NG; Dahl-Jørgensen, K; Sebastiani, G; Dotta, F; Bosi, E; DRI_Biorepository Group; Type 1 Diabetes TrialNet Study Group; Battaglia, M. Abnormal neutrophil signature in the blood and pancreas of presymptomatic and symptomatic type 1 diabetes. JCI Insight: 2018; 3(18): e122146
2017
1. Petitprez, F; Fossati, N; Vano, Y; Freschi, M; Becht, E; Lucianò, R; Calderaro, J; Guédet, T; Lacroix, L; Rancoita, PMV; Montorsi, F; Fridman, WH; Sautès-Fridman, C; Briganti, A; Doglioni, C; Bellone, M. PD-L1 Expression and CD8+ T-cell Infiltrate are Associated with Clinical Progression in Patients with Node-positive Prostate Cancer. Eur. Urol. Focus: 2017; (): in Press
2. Cugnata, F; Perucca, G; Salini, S. Bayesian networks and the assessment of universities' value added. J. Appl. Stat.: 2017; 44(10): 1785-1806
3. Rancoita, PMV; Valberg, M; Demicheli, R; Biganzoli, E; Di Serio, C. Tumor dormancy and frailty models: A novel approach. Biometrics: 2017; 73(1): 260-270
4. Rancoita, PMV; Valberg, M; Demicheli, R; Biganzoli, E; Di Serio, C. Tumor dormancy and frailty models: A novel approach. Biometrics: 2017; 73(1): 260-270
5. Ferreri, AJM; Sassone, M; Zaja, F; Re, A; Spina, M; Rocco, AD; Fabbri, A; Stelitano, C; Frezzato, M; Rusconi, C; Zambello, R; Couto, S; Ren, Y; Arcari, A; Bertoldero, G; Nonis, A; Scarfò, L; Calimeri, T; Cecchetti, C; Chiozzotto, M; Govi, S; Ponzoni, M. Lenalidomide maintenance in patients with relapsed diffuse large B-cell lymphoma who are not eligible for autologous stem cell transplantation: an open label, single-arm, multicentre phase 2 trial. Lancet Haematol.: 2017; 4(3): e137-e146
6. Scaini, S; Ogliari, A; De Carolis, L; Bellodi, L; Di Serio, C; Brombin, C. Evaluation of mother-child agreement and factorial structures of the SCARED questionnaire in an Italian clinical sample. Front. Psychol.: 2017; 8: 242
7. Martoni, RM; Rancoita, PMV; Di Serio, C; Brombin, C. Validating the Italian version of the disgust and propensity scale-revised. Front. Psychol.: 2017; 8: 765
8. de Campos, CP; Rancoita, PMV. Introduction to the special issue on statistical and computational methods for genomics and integrative genomics. Int J Approximate Reasoning: 2017; 90: 272-273 - Editorial
9. Tortoli, E; Kohl, TA; Trovato, A; Baldan, R; Campana, S; Cariani, L; Colombo, C; Costa, D; Cristadoro, S; Di Serio, MC; Manca, A; Pizzamiglio, G; Rancoita, PMV; Rossolini, GM; Taccetti, G; Teri, A; Niemann, S; Cirillo, DM. Mycobacterium abscessus in patients with cystic fibrosis: Low impact of inter-human transmission in Italy. Eur. Respir. J.: 2017; 50(1): 1602525 - Letter
10. Di Mattei, VE; Carnelli, L; Taranto, P; Bernardi, M; Brombin, C; Cugnata, F; Noviello, A; Currin, M; Mangili, G; Rabaiotti, E; Sarno, L; Candiani, M. "Health in the mirror": An unconventional approach to unmet psychological needs in oncology. Front. Psychol.: 2017; 8: 1633
11. Scaini, S; Rancoita, PMV; Martoni, RM; Omero, M; Ogliari, A; Brombin, C. Integrating Dimensional and Discrete Theories of Emotions: A New Set of Anger- and Fear-Eliciting Stimuli for Children. J. Genet. Psychol.: 2017; 178(5): 253-261
12. Morsica, G; Bagaglio, S; Spagnuolo, V; Castagna, A; Di Serio, C; Galli, A; Della-Torre, L; Andolina, A; Pramov, A; Uberti-Foppa, C. Immune response to hepatitis B vaccination in HIV-positive individuals with isolated antibodies against hepatitis B core antigen: Results of a prospective Italian study. PLoS ONE: 2017; 12(9): e0184128
13. Forcina, A; Rancoita, PMV; Marcatti, M; Greco, R; Lupo-Stanghellini, MT; Carrabba, M; Marasco, V; Di Serio, C; Bernardi, M; Peccatori, J; Corti, C; Bondanza, A; Ciceri, F. A New Clinicobiological Scoring System for the Prediction of Infection-Related Mortality and Survival after Allogeneic Hematopoietic Stem Cell Transplantation. Biol. Blood Marrow Transplant.: 2017; 23(12): 2151-2158
2016
1. Di Mattei, VE; Carnelli, L; Carrara, L; Bernardi, M; Crespi, G; Rancoita, PMV; Bergamini, A; Petrone, M; Ritella, C; Rabaiotti, E; Mangili, G. Chemotherapy-Induced Nausea and Vomiting in Women With Gynecological Cancer: A Preliminary Single-Center Study Investigating Medical and Psychosocial Risk Factors. Cancer Nurs.: 2016; 39(6): E52–E59
2. Brombin, C; Di Serio, C. Evaluating treatment effect within a multivariate stochastic ordering framework: Nonparametric combination methodology applied to a study on multiple sclerosis. Stat. Methods Med. Res.: 2016; 25(1): 366-384
3. Sessa, M and Lorioli, L; Fumagalli, F; Acquati, S; Redaelli, D; Baldoli, C; Canale, S; Lopez, ID; Morena, F; Calabria, A; Fiori, R; Silvani, P; Rancoita, PMV; Gabaldo, M; Benedicenti, F; Antonioli, G; Assanelli, A; Cicalese, MP; Del Carro, U; Natali Sora, MG; Martino, S; Quattrini, A; Montini, E; Di Serio, C; Ciceri, F; Roncarolo, MG; Aiuti, A; Naldini, L; Biffi, A. Lentiviral haemopoietic stem-cell gene therapy in early-onset metachromatic leukodystrophy: an ad-hoc analysis of a non-randomised, open-label, phase 1/2 trial. Lancet: 2016; 388(10043): 476-487
4. Castronovo, V; Galbiati, A; Marelli, S; Brombin, C; Cugnata, F; Giarolli, L; Anelli, MM; Rinaldi, F; Ferini-Strambi, L. Validation study of the Italian version of the Insomnia Severity Index (ISI). Neurol Sci: 2016; 37(9): 1517-1524
5. Barcellini, L; Borroni, E; Brown, J; Brunetti, E; Codecasa, L; Cugnata, F; Dal Monte, P; Di Serio, C; Goletti, D; Lombardi, G; Lipman, M; Rancoita, PMV; Tadolini, M; Cirillo, DM. First independent evaluation of QuantiFERON-TB Plus performance. Eur. Respir. J.: 2016; 47(5): 1587-1590 - Letter
6. Farinelli, G; Jofra Hernandez, R; Rossi, A; Ranucci, S; Sanvito, F; Migliavacca, M; Brombin, C; Pramov, A; Di Serio, C; Bovolenta, C; Gentner, B; Bragonzi, A and Aiuti, A. Lentiviral Vector Gene Therapy Protects XCGD Mice From Acute Staphylococcus aureus Pneumonia and Inflammatory Response. Mol Ther: 2016; 24(10): 1873–1880
7. Marelli, S; Rancoita, PMV; Giarrusso, F; Galbiati, A; Zucconi, M; Oldani, A; Di Serio, C; Ferini-Strambi, L. National validation and proposed revision of REM sleep behavior disorder screening questionnaire (RBDSQ). J. Neurol.: 2016; 263(12): 2470-2475
8. Brombin, C; Di Serio, C; Rancoita, PMV. Joint modeling of HIV data in multicenter observational studies: A comparison among different approaches. Stat. Methods Med. Res.: 2016; 25(6): 2472-2487
9. Barcellini, L; Borroni, E; Brown, J; Brunetti, E; Campisi, D; Castellotti, PF; Codecasa, LR; Cugnata, F; Di Serio, C; Ferrarese, M; Goletti, D; Lipman, M; Rancoita, PMV; Russo, G; Tadolini, M; Vanino, E; Cirillo, DM. First evaluation of QuantiFERON-TB gold plus performance in contact screening. Eur. Respir. J.: 2016; 48(5): 1411-1419
10. Pellin, D; Di Serio, C. A novel scan statistics approach for clustering identification and comparison in binary genomic data. BMC Bioinform.: 2016; 17(Suppl. 11): 320 - Conference Paper
11. Bolino, A; Piguet, F; Alberizzi, V; Pellegatta, M; Rivellini, C; Guerrero-Valero, M; Noseda, R; Brombin, C; Nonis, A; D'Adamo, P; Taveggia, C; Previtali, SC. Niacin-mediated Tace activation ameliorates CMT neuropathies with focal hypermyelination. EMBO Mol. Med.: 2016; 8(12): 1438-1454
12. de Campos, CP; Pereira, CAdB; Rancoita, PMV; Polpo, A. Ordering quantiles through confidence statements. Entropy: 2016; 18(10): 357
13. Di Mattei, VE; Carnelli, L; Bernardi, M; Jongerius, C; Brombin, C; Cugnata, F; Ogliari, A; Rinaldi, S; Candiani, M; Sarno, L. Identification of socio-demographic and psychological factors affecting women's propensity to breastfeed: An Italian Cohort. Front. Psychol.: 2016; 7: 1872
14. Esposito, A; Palmisano, A; Antunes, S; Maccabelli, G; Colantoni, C; Rancoita, PM; Baratto, F; Di Serio, C; Rizzo, G; De Cobelli, F; Della Bella, P; Del Maschio, A. Cardiac CT With Delayed Enhancement in the Characterization of Ventricular Tachycardia Structural Substrate: Relationship Between CT-Segmented Scar and Electro-Anatomic Mapping. JACC Cardiovasc Imaging: 2016; 9(7): 822-832
15. Biasco, L; Pellin, D; Scala, S; Dionisio, F; Basso-Ricci, L; Leonardelli, L; Scaramuzza, S; Baricordi, C; Ferrua, F; Cicalese, MP; Giannelli, S; Neduva, V; Dow, DJ; Schmidt, M; Von Kalle, C; Roncarolo, MG; Ciceri, F; Vicard, P; Wit, E; Di Serio, C; Naldini, L; Aiuti, A. In Vivo Tracking of Human Hematopoiesis Reveals Patterns of Clonal Dynamics during Early and Steady-State Reconstitution Phases. Cell Stem Cell: 2016; 19(1): 107-119
16. Rancoita, PMV; Zaffalon, M; Zucca, E; Bertoni, F; de Campos, CP. Bayesian network data imputation with application to survival tree analysis. Computat Statist Data Analysis: 2016; 93: 373-387
2015
1. Martoni, RM; Brombin, C; Nonis, A; Salgari, GC; Buongiorno, A; Cavallini, MC; Galimberti, E; Bellodi, L. Evaluating Effect of Symptoms Heterogeneity on Decision Making Ability in Obsessive Compulsive Disorder. Psychiatry Clin Neurosci: 2015; 69(7): 402-410
2. Baldan, R; Rancoita, PM; Di Serio, C; Mazzotti, M; Cichero, P; Ossi, C; Biancardi, A; Nizzero, P; Saracco, A; Scarpellini, P; Cirillo, DM. Epidemic MRSA clone ST22-IV is more resistant to multiple host- and environment-related stresses compared with ST228-I. J. Antimicrob. Chemother.: 2015; 70(3): 757-765
3. Racioppi, M; Salmaso, L; Brombin, C; Arboretti, R; D'Agostino, D; Colombo, R; Serretta, V; Brausi, M; Casetta, G; Gontero, P; Hurle, R; Tenaglia, R; Altieri, V; Bartoletti, R; Maffezzini, M; Siracusano, S; Morgia, G; Bassi, PF. The clinical use of statistical permutation test methodology: A tool for identifying predictive variables of outcome. Urol. Int.: 2015; 94(3): 262-269
4. Lelek, M; Casartelli, N and Pellin, D and Rizzi, E; Souque, P; Severgnini, M; Di Serio, C; Fricke, T; Diaz-Griffero, F; Zimmer, C; Charneau, P; Di Nunzio, F. Chromatin organization at the nuclear pore favours HIV replication. Nat. Commun.: 2015; 6: 6483
5. Trentini, F; Malgaroli, M; Camerini, AL; Di Serio, C; Schulz, P. Multivariate determinants of self-management in Health Care: Assessing Health Empowerment Model by comparison between structural equation and graphical models approaches. Epidemiol. Biostat. Public Health: 2015; 12(1): 1-13
6. Brombin, C; Salmaso, L; Fontanella, L; Ippoliti, L. Nonparametric combination-based tests in dynamic shape analysis. J. Nonparametric Stat.: 2015; 27(4): 460-484
7. Bagaglio, S; Uberti-Foppa, C; Di Serio, C; Trentini, F; Andolina, A; Hasson, H; Messina, E; Merli, M; Porrino, L; Lazzarin, A; Morsica, G. Dynamic of mixed HCV infection in plasma and PBMC of HIV/HCV patients under treatment with Peg-IFN/ribavirin. Medicine: 2015; 94(43): e1876
8. Mazzieri, R; Pietrogrande, G; Gerasi, L; Gandelli, A; Colombo, P; Moi, D; Brombin, C; Ambrosi, A; Danese, S; Mignatti, P; Blasi, F; D'Alessio, S. Urokinase Receptor Promotes Skin Tumor Formation by Preventing Epithelial Cell Activation of Notch1. Cancer Res: 2015; 75(22): 4895-4909
2014
1. Baldan R, Cigana C, Testa F, Bianconi I, De Simone M, Pellin D, Di Serio M, Bragonzi A, Cirillo DM. (2014). Adaptation of Pseudomonas aeruginosa in Cystic Fibrosis airways influences virulence of Staphylococcus aureus in vitro and murine models of co-infection. PLOS ONE, vol. 9, ISSN: 1932-6203, doi: 10.1371.
2. Brombin, C., Di Serio M, Rancoita, P. M. V (2014). Joint modeling of HIV data in multicentre observational studies: a comparison among different approaches. . STATISTICAL METHODS IN MEDICAL RESEARCH, vol. 23, ISSN: 0962-2802, doi: 10.1177/0962280214526192.
3. Nonis A, De Nardi B, Nonis A. Choosing between RT-qPCR and RNA-seq: a back-of-the-envelope estimate towards the definition of the break-even-point. Anal Bioanal Chem. 2014 Apr 1
4. Pietro Ciampi, Celeste Scotti, Alessandro Nonis, Matteo Vitali, Di Serio M, Giuseppe M Peretti, Gianfranco Fraschini (2014). The Benefit of Synthetic Versus Biological Patch Augmentation in the Repair of Posterosuperior Massive Rotator Cuff Tears: A 3-Year Follow-up Study.. THE AMERICAN JOURNAL OF SPORTS MEDICINE, vol. 42, p. 1169-1175, ISSN: 0363-5465.
5. Daniela Cesana, Marco Ranzani, Monica Volpin, Cynthia Bartholomae, Caroline Duros, Alexandre Artus, Stefania Merella, Fabrizio Benedicenti, Lucia Sergi Sergi, Francesca Sanvito, Chiara Brombin, Alessandro Nonis, Di Serio M, Claudio Doglioni, Christof von Kalle, Manfred Schmidt, Odile Cohen-Haguenauer, Luigi Naldini, Eugenio Montini (2014). Uncovering and dissecting the genotoxicity of self-inactivating lentiviral vectors in vivo.. MOLECULAR THERAPY, vol. 22, ISSN: 1525-0016.
6. S. Danafar, P.M.V. Rancoita, T. Glasmachers, K. Whittinstall and J. Schmidhuber (2014), Testing hypotheses by regularized maximum mean discrepancy, International Journal of Computer and Information Technology, 3:2, #7.
7. L. Ferini-Strambi, W. Oertel, Y. Dauvilliers, R.B. Postuma, S. Marelli, A. Iranzo, I. Arnulf, H. Birgit, R. Manni, T. Miyamoto, M.L. Fantini, M. Puligheddu, P. Jennum, K. Sonka, J. Santamaria, M. Zucconi, P.M.V. Rancoita, S. Leu-Semenescu, B. Frauscher, M. Terzaghi, M. Miyamoto, M. Unger, K. Stiasny-Kolster, A. Desautels, C. Wolfson, A. Pelletier and J. Montplaisir (2014), Autonomic symptoms in idiopathic REM behavior disorder: a multicentre casecontrol study, Journal of Neurology. Published online ahead of print.
8. Brigida, I., Sauer, A. V., Ferrua, F., Giannelli, S., Scaramuzza, S., Pistoia, V., Castiello, M. C., Barendregt, B. H., Cicalese, M. P., Casiraghi, M., Brombin, C., Puck, J., Müller, K., Notarangelo, L. D., Montin, D., van Montfrans, J. M., Roncarolo, M. G., Traggiai, E., van Dongen, J. J.M., van der Burg, M., Aiuti, A. (2014) B-cell development and functions and therapeutic options in adenosine deaminase-deficient patients. Journal of Allergy and Clinical Immunology. Article published online before print.
9. Brombin, C., Di Serio, C., Rancoita, P. M. V. (2014) Joint modeling of HIV data in multicentre observational studies: a comparison among different approaches. Accepted for publication in Statistical Methods in Medical Research.
2013
1. Brombin, C., Salmaso, L. (2013) Permutation Tests for Shape Analysis. Sprin- gerBriefs in Statistics, Vol. 15, ISBN 978-1-4614-8163-8.
2. Brombin, C., Diomede, L., Tudor, D., Drillet, A. S., Pastori, C., Poli, E., Ri- va, A., Uberti-Foppa, C., Galli, M., Di Serio, C., Bomsel, M. and Lopalco, L. (2013). A nonparametric procedure for defining a new humoral immunological profile in a pilot study on HIV infected patients. PLoS One 8:e58768. DOI: 10.1371/journal.pone.0058768.
3. Alessandra Biffi,Eugenio Montini,Laura Lorioli,Martina Cesani,Francesca Fumagalli,Tiziana Plati,Cristina Baldoli,Sabata Martino,Andrea Calabria,Sabrina Canale,Fabrizio Benedicenti,Giuliana Vallanti,Luca Biasco,Simone Leo,Nabil Kabbara,Gianluigi Zanetti,William B. Rizzo,Nalini A. L. Mehta,Maria Pia Cicalese,Miriam Casiraghi,Jaap J. Boelens,Ubaldo Del Carro,David J. Dow,Manfred Schmidt,Andrea Assanelli,Victor Neduva,Clelia Di Serio,Elia Stupka,Jason Gardner,Christof von Kalle,Claudio Bordignon,Fabio Ciceri,Attilio Rovelli,Maria Grazia Roncarolo,Alessandro Aiuti,Maria Sessa,and Luigi Naldini, "Lentiviral Hematopoietic Stem Cell Gene Therapy Benefits Metachromatic Leukodystrophy". Science 23 August 2013: 1233158, Published online 11 July 2013
4. Alessandro Aiuti,Luca Biasco,Samantha Scaramuzza,Francesca Ferrua,Maria Pia Cicalese,Cristina Baricordi,Francesca Dionisio,Andrea Calabria,Stefania Giannelli,Maria Carmina Castiello,Marita Bosticardo,Costanza Evangelio,Andrea Assanelli,Miriam Casiraghi,Sara Di Nunzio,Luciano Callegaro,Claudia Benati,Paolo Rizzardi,Danilo Pellin,Clelia Di Serio,Manfred Schmidt,Christof Von Kalle,Jason Gardner,Nalini Mehta,Victor Neduva,David J. Dow,Anne Galy,Roberto Miniero,Andrea Finocchi,Ayse Metin,Pinaki P. Banerjee,Jordan S. Orange,Stefania Galimberti,Maria Grazia Valsecchi,Alessandra Biffi,Eugenio Montini,Anna Villa,Fabio Ciceri,Maria Grazia Roncarolo,and Luigi Naldini, "Lentiviral Hematopoietic Stem Cell Gene Therapy in Patients with Wiskott-Aldrich Syndrome". Science 23 August 2013: 1233151Published online 11 July 2013
5. Miotto P, Forti F, Ambrosi A, Pellin D, Veiga DF, Gabor Balazsi, Maria L. Gennaro, Clelia Di Serio, Daniela Ghisotti, Daniela M. Cirillo (2012), "Genome-Wide Discovery of Small RNAs in Mycobacterium tuberculosis". PLoS ONE 7(12): e51950. doi:10.1371/journal.pone.0051950
6. Gagliani N., Magnani C.F., Huber S., Gianolini E., Pala M., Licona-Limon P., Guo B., De Broski H., Bulfone A., Trentini F., Di Serio C., Roncarolo M.G. et al (2013) “Co-expression of CD49b e LAG-3 identifies human and murine Tr1 cells”, Nature Medicine
7. Trentini F., Mueller P., Ji Y. (2013) “A Bayesian framework for integrating copy number and gene expression data, in Advances in Statistical Bioinformatics: Models and Integrative Inferences for High-Throughput Data”, edited by Do K.A., Qin Z., Vannucci M., Cambridge University Press
8. Trentini F., Ji Y., Iwamoto T., Qi J., Pustzai L., Mueller P. (2013) “Bayesian Mixture Models for Assessment of Gene Differential Behaviour and Prediction of pCR through the integration of copy number and gene expression data”, PLOS ONE
9. Kluth LA, Abdollah F, Xylinas E, Rieken M, Fajkovic H, Sun M, Karakiewicz PI, Seitz C, Schramek P, Herman MP, Becker A, Loidl W, Pummer K, Nonis A, Lee RK, Lotan Y, Scherr DS, Seiler D, Chun FK, Graefen M, Tewari A, Gönen M, Montorsi F, Shariat SF, Briganti A. Pathologic Nodal Staging Scores in Patients Treated with Radical Prostatectomy: A Postoperative Decision Tool. Eur Urol. 2013 Jul 2. doi:pii: S0302-2838(13)00656-8. 10.1016/j.eururo.2013.06.041. [Epub ahead of print] PubMed PMID: 23850255.
10. C.P. de Campos, P.M.V. Rancoita, I. Kwee, E. Zucca, M. Zaffalon and F. Bertoni (2013), Discovering subgroups of patients from DNA copy number data using NMF on compacted matrices, PLoS ONE, in press.
2012
1. Danilo Pellin, Paolo Miotto, Alessandro Ambrosi, Daniela Maria Cirillo, and Clelia Di Serio, “A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobacterium tuberculosis by RNA-Seq and Conservation Analysis”, (2012) PLoS ONE 7(3): e32723.doi:10.1371/journal.pone.0032723
2. Capotondo A, Milazzo R, Politi LS, Quattrini A, Palini A, Plati T, Merella S, Nonis A, di Serio C, Montini E, Naldini L, Biffi A. “Brain conditioning is instrumental for successful microglia reconstitution following hematopoietic stem cell transplantation”, Proc Natl Acad Sci U S A. 2012 Aug 23. doi: 10.1073/pnas.1205858109
3. Moira Paroni, Federica Moalli, Manuela Nebuloni, Fabio Pasqualini, Tracey Bonfield, Alessandro Nonis, Alberto Mantovani, Cecilia Garlanda and Alessandra Bragonzi, “Response of CFTR-deficient mice to long-term Pseudomonas aeruginosa chronic infection and PTX3 therapeutic treatment”, accepted for publication in The Journal of Infectious Diseases.
4. Brombin, C., Di Serio, C. (2012) Evaluating treatment effect within a multivariate stochastic ordering framework: NPC methodology applied to a study on Multiple Sclerosis. Statistical Methods in Medical Research. DOI: 10.1177/0962280212454203. Article published online before print.
5. Brombin, C., Di Serio, C. and Crippa, M. (2012) Modeling cancer cells growth. Communications in Statistics-Theory and Methods. Special Issue-Statistics for complex problems, 41, 3043-3059.
6. Alfieri, R., Bonnini, S., Brombin, C., Castoro, C., Salmaso, L. (2012) Iterated combination-based paired permutation tests to determine shape effects of che- motherapy in patients with esophageal cancer. Statistical Methods in Medical Research. DOI: 10.1177/0962280212461981. Article published online before print.
7. Mizuno, H., Vergara, P., Maccabelli, G., Trevisi, N., Colombo, S., Brombin, C., Mazzone, P. and Della Bella, P. (2012) Contact Force Monitoring for cardiac Mapping in Patients with Ventricular Tachycardia. Journal of Cardiovascular Electrophysiology. DOI: 10.1111/jce.12080.
8. Cantore, A., Nair, N., Della Valle, P., Di Matteo, M., Màtrai, J., Sanvito, F., Brombin, C., Di Serio, C., D’Angelo, A., Chuah, M., Naldini, L., VandenDries- sche, T. (2012) Hyper-functional coagulation factor IX improves the efficacy of gene therapy in hemophilic mice. Blood. 120, 4517-20. DOI: 10.1182/blood- 2012-05-432591.
9. Xynos A, Neguembor MV, Caccia R, Licastro D, Nonis A, Di Serio C, Stupka E,Gabellini D. Overexpression of facioscapulohumeral muscular dystrophy region gene1 causes primary defects in myogenic stem cells. J Cell Sci. 2013 May 15;126(Pt10):2236-45. doi: 10.1242/jcs.121533. Epub 2013 Mar 22. PubMed PMID: 23525014.
2011
1. Bortolanza S, Nonis A, Sanvito F, Maciotta S, Sitia G, Wei J, Torrente Y, Di Serio C, Chamberlain JR, Gabellini D. "AAV6-mediated systemic shRNA delivery reverses disease in a mouse model of facioscapulohumeral muscular dystrophy.,”. Mol Ther. 2011 Nov;19(11):2055-64. doi: 10.1038/mt.2011.153.
2. Di Serio C. , Zugna D., “ Modelling evolution of Multiple Sclerosis: evidence from survival and longitudinal approach”, (2011) JP J. Biostat. 4, No. 3, 289-311.
3. Alessandro Ambrosi, Ingrid K. Glad, Danilo Pellin, Claudia Cattoglio, Fulvio Mavilio, Clelia Di Serio, Arnoldo Frigessi: Estimated Comparative Integration Hotspots Identify Different Behaviors of Retroviral Gene Transfer Vectors. PLoS Computational Biology 7(12): (2011).
4. Abigail F. Welford, Daniela Biziato, Seth B. Coffelt, Silvia Nucera, Matthew Fisher, Ferdinando Pucci, Clelia Di Serio, Luigi Naldini,Michele De Palma, Gillian M. Tozer and Claire E. Lewis, (2011) “TIE2-Expressing Macrophages Limit the Therapeutic Efficacy of the Vascular Disrupting Agent, Combretastatin-A4-Phosphate in Mice”, Journal of Clinical Investigation.
5. Biasco, Ambrosi, Pellin, Bartholomae, Brigida, Roncarolo, Di Serio, von Kalle, Schmidt, Aiuti, "Integration profile of retroviral vector in gene therapy treated patients is cell-specific according to gene expression and chromatin conformation of target cell.", EMBO Mol Med. 2011 Feb;3(2):89-101. doi: 10.1002/emmm.201000108.
6. Brombin, C., Salmaso, L., Ferronato, G. and Galzignato, PF. (2011) Multi-aspect procedures for paired data with application to biometric morphing. Communications in Statistics - Simulation and Computation, 40, 1-12.
2010
1. Claudia Cattoglio, Danilo Pellin, Ermanno Rizzi, Giulietta Maruggi, Giorgio Corti, Francesca Miselli, Daniela Sartori, Alessandro Guffanti, Clelia Di Serio, Alessandro Ambrosi, Gianluca De Bellis and Fulvio Mavilio, (2010)”High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors”, BLOOD, December 2010.
2. A.Ambrosi, D. Pellin, P.Miotto, D. Cirillo and Clelia Di Serio, (2010) “A genome-wide identification analysis of small regulatory RNAs in Mycobacterium tuberculosi by RNA-Seq”, LARS 2010, Proceedings.
3. Politi, Forghiani, Godi, Resti, Ponzoni, Bianchi, Iadanza, Ambrosi, Falini, Ferreri, Curtin, Scotti, "Ocular Adnexal Lymphoma: Diffusion-weighted MR Imaging for Differential Diagnosis and Therapeutical Monitoring", Radiology, August 2010; 256(2).
4. Miotto, Ambrosi, Pellin, Di Serio, Cirillo, "Experimental discovery of small regulatory RNAs in M. tuberculosis: a genome-wide analysis", Proceedings of the European Respiartory Society; Barcellona (ESP) 18th-22th Sep. 2010.
5. Ambrosi, Pellin, Miotto, Cirillo, Di Serio, "A Genome-Wide Identification Analysis of Small Regulatory RNAs in Mycobaterium Tubercolosis by RNA-Seq", Proceeedings of The 29th Leeds Annual Statistical Research Workshop, Leeds (UK); 6th-8th July 2010.
6. Floreani, A., Caroli, D., Variola, A., Rizzotto, E.R., Antoniazzi, S., Chiaramonte, M., Cazzagon, N., Brombin, C., Salmaso, L., Baldo, V. (2010) A 35-year follow-up of a large cohort of patients with primary biliary cirrhosis seen at a single centre. Liver International 8. doi: 10.1111/j.1478-3231.2010.02366.x.
7. Finos, L., Brombin, C., Salmaso, L. (2010) Adjusting stepwise p-values in generali- zed linear models. Communications in Statistics - Theory and Methods 39, 1832-1846.
8. Brombin, C., Pesarin, F. and Salmaso, L. (2010) Dealing with more variables than sample sizes: an application to Shape Analysis. Nonparametric statistics and mixture models A Festschrift in Honor of Thomas P. Hettmansperger, The Pennsylvania State University, USA, 23 - 24 May 2008. ISBN: 978-981-4340-55- 7 981-4340-55-3
2009
1. Montini, Cesana, Schmidt, Sanvito, Bartholomae, Ranzani, Benedicenti, Sergi Sergi, Ambrosi, Ponzoni, Doglioni, Di Serio, von Kalle, Naldini, “The Genotoxic Potential of Retroviral Vectors is Strongly Modulated by Vector Design and Integration Site Selection”, J. Clin. Invest., in press.
2. Di Serio, “Evaluating Covariates In Presence Of Dependent Competing Risks: Evidence From An Esophageal Cancer Study”, J. Biostatistics, 2009, in press.
3. Ambrosi, Di Serio, “Vectors and Integration in Gene Therapy: Statistical Considerations”, J. Computer Science & Systems Biology, in press.
4. Di Serio, Rinott, Scarsini, “Simpson Paradox in Survival Models”, Scandinavian J. Statistics, 2009, in press.
5. C.DI SERIO, RINOTT YOSI AND MARCO SCARSINI, “Simpson Paradox in Survival Analysis: a mathematical approach” (2009) Scandinavian Journal of Statistics, February
6. Miselli, Cattoglio, Pellin, Ambrosi, Rizzi, Maruggi, Recchia, De Bellis, Mavilio, "High-Resolution Profiling of MLV Integration in Human CD34 Cells Reveals cell-Specific Transcriptional Regulatory Elements", Human Gene Therapy, 2009; 20(11):1407-1408.
7. Biasco, Ambrosi, Pellin, Bartholoma, Brigida, Shmidt, Roncarolo, Di Serio, Von Kalle, Aiuti, "Gene Expression Profile and Chromatin Conformation of Target Cell Llead to a Cell-specific Integration Distribution of Retroviral Vector in Lymphocytes and Hematopoietic Stem Cells from ADA-SCID Patients", Proceedings of the ESGCT, GSZ, GG-GT, USCT, 20th-25th Nov. 2009, Hannover - Germany
8. Battaglia, Zanoni, Ogliari, Crevani, Falzone, Bertoletti, Di Serio, “Identification of Gradually Changing Emotional Expressions in Schoolchildren: the Influence of the Type of Stimuli and of Specific Symptoms of Anxiety”, Cognition & Emotion, 2009, in press.
9. Di Serio, Lamina., “Investigating Determinants Of Multilple Sclerosis In Longitudinal Studies: A Bayesian Approach”, Journal of Probability and Statistics 10/09
10. Nigro, Brini, Soprana, Ambrosi, Dombrowicz, Siccardi, Vangelista, “Anti-tumor IgE Adjuvanticity: Key Role of FcεRI”, Journal of Immunology, 2009; 183(7):4530-4536.
11. Cassani, Montini, Maruggi, Ambrosi, Mirolo, Biral, Frugnoli1, Di Serio, Roncarolo, Naldini, Mavilio, Aiuti, “Integration of Retroviral Vector Induces Minor Changes in the Transcriptional Activity of T Cells from ADA-SCID Patients Treated with Gene Therapy”, Blood, 2009; 114(17):3546-3556.
12. Cattoglio, Felice, Cittaro, Ambrosi, Pellin, Rizzi, De Bellis, Bonini, Maruggi, Miselli, Schmidt, Luzi, Recchia, Mavilio, "Cell-Specific Transcriptional Regulatory Domains Attract Gamma-Retroviral Integration in the Human Genome", Procedeengs of the ASGT, 27th-30th May 2009, San Diego - USA.
13. Biasco, Brigida, Cassani, LO Perfido, Ambrosi, Bartholoma, Schmidt, von Kalle, Roncarolo, Aiuti, "Comparative Study of Retroviral Insertions in ADA-ASCID Patients Treated with PBL-GT and HSC-GT Unveils a CellSpecific Integration Profile", Procedeengs of the ASGT, 27th-30th May 2009, San Diego - USA.
14. Sauer, Mrak, Hernandez, Zacchi, Cavani, Casiraghi, Grunebaum, Roifman, Cervi, Ambrosi, Carlucci, Roncarolo, Villa, Rubinacci, Aiuti, “ADA-Deficient SCID is Associated with a Specific Microenviroment and Bone Phenotype Characterized by RANKL/OPG Imbalance and Osteoblasts Insufficiency”, Blood, 2009; 114(15): 3216-3226.
15. Ambrosi, Di Serio, “Integration Process in Gene Therapy: a Statistical Challenge”, proceedings of the VII congress of the International Biometric Society (Italian Region); Ponte di Legno (BS), 10-12 giugno 2009.
16. Maruggi, Porcellini, Facchini, Kimi Perna, Cattoglio, Sartori, Ambrosi, Schambach, Baum, Bonini, Bovolenta, Mavilio, Recchia, “Transcriptional Enhancers Induce Insertional Gene Activation Independently from the Vector Context”, Molecular Therapy, 2009 May; 17(5):851-6.
2008
1. Montini, Cesana, Schmidt, Sanvito, Bartholomae, Ranzani, Benedicenti, Sergi Sergi, Ambrosi, Ponzoni, Doglioni, Di Serio, von Kalle, Naldini, “The Genotoxic Potential of Retroviral Vectors is Strongly Modulated by Vector Design and Integration Site Selection”, Hum. Gene Ther., Oct 2008; 19(10).
2. Ambrosi, Cattoglio, Di Serio, “Retroviral Integration Process in Human Genome: is it Really not Random? A New Statistical Approach”, PLoS Comput. Biol., 2008 Aug.; 4(8): e1000144.
3. Giovannini, Roca, Snider, Picozzi, Lazzari, Belli, Bolognesi, Ambrosi, Villa, Gregorc, “Impact of Clinical Parameters on Outcome of Patients Treated with Gamma Knife Stereotactic Radiosurgery for Brain Metastasis from Non-Small Cell Lung Cancer”, Ann. Oncol., Sept. 2008; 19(S8)
4. Petrone, Arcidiacono, Boemo, Ambrosi, Carrara, Mezzi, Testoni, “Endosonographic Abnormality of Pancreas: Age-Related Changes or not?”, Gastrointest. Endosc., 2008 Apr.; 67(5) S.
5. Carrara, Arcidiacono, Albarello, Addis, Enderle, Boemo, Voigtländer, Besch, Campagnol, Ambrosi, Doglioni, Testoni, “EUS-guided Application of a New Hybrid Ablation Device with a “Cryotherm” Probe in Intraabdominal Parenchymal Organs: Feasibility, Efficacy and Safety in an Animal Model”, Endoscopy, 2008 Apr.; 40(4):321-6.
6. Benningoff, Cattaneo, Aiuti, Flores-D’Arcais, Gelmetti, Viscardi, Callegaro, Miralo, Ambrosi, Roncarolo, Bacchetta, “Clinical Improvement and Normalized Th1 Cytokine Profile in Hyper-IgE Syndrome Treated with Interferon-α”, Pediatr. Allergy Immunol.; Sept. 2008; 19(6):564-568.
2007
1. Ambrosi, Di Serio, “Integration in Gene Therapy: How to Model Integration Events Distribution”, S.Co. 2007 proceedings: Complex Models and Computational Intensive Methods for Estimation and Prediction - 5th conference. Venezia, sept. 2007.
2. Di Serio, Ambrosi, Nonis, “Gene Expression: an Example of Statistical Analysis of Real-Time PCR Data”, S.Co. 2007 proceedings: Complex Models and Computational Intensive Methods for Estimation and Prediction - 5th conference. Venezia, sept. 2007.
3. Di Serio, Ambrosi, “Detecting Statistically Significant Hotspots in Gene Therapy”, S.Co. 2007 proceedings: Complex Models and Computational Intensive Metods for Estimation and Predition - 5th conference. Venezia, sept. 2007.
4. Aiuti, Cassani, Andolfi, Miralo, Biasco, Recchia, Urbinati, Valacca, Scaramuza, Cazzola, Sartori, Ambrosi, Di Serio, Roncarolo, Mavilio, Bordignon, “Reconstruction of Multilineage Hematopoiesis Without Clonal Selection in Adenosine Deaminase (ADA)-Deficient Patients with Stem Cell Gene Therapy”, J. Clin. Invest., Aug 2007; 117: 2233 - 2240.
5. Canale, Falautano, Di Serio, et al. “Affective and cognitive correlates in relapsing-remitting multiple sclerosis: ITACA study”, Multiple Sclerosis”, 2007, vol. 13.
6. Lusso, Crowley, Malnati Di Serio, Ponzoni, Biancotto, Markham Gallo, “Human Herpesvirus 6A Accelerates AIDS Progression in Macaques”, PNAS, 2007, 104(12).
7. Marchet, Mocellin, Belluco, Ambrosi, De Marchi, Mammano, Digito, Leon, D’Arrigo, Lise, Nitti, “Gene Expression Profile of Primary Gastric Cancer: Towards the Prediction of Lymph Node Status”, Ann Surg Oncol. 2007 Mar;14(3):1058-64.
8. Marchet, Mocellin, Ambrosi, Morgagni, Garcea, Paragon, Marrelli, Rovello, Pedrazzani, de Manzoni, Di Leo, Minicozzi, Natalini, De Santis, Boncompagni, Tiberio, Baiocchi, Coniglio, Nitti, “The Ratio Between Metastatic and Examined Lymph Nodes (N-ratio) is an Independent Prognostic Factor in Gastric Cancer Regardless of the Type of Lymphadenectomy: Results from an Italian Multicentric Study in 1,853 Patients”, Ann. Surg., 2007 Apr; 245(4).
2006
1. Cassani, Andolfi, Miralo, Biasco, Recchia, Urbinati, Valacca, Scaramazza, Cazzola, Sartori, Ambrosi, Di Serio, Roncarolo, Mavilio, Bordignon, Aiuti, “Clonal Analyses of Retroviral Vector Integrations in ADA-SCID Patients Treated with Stem Cell Gene Therapy”, Blood 108 (11): 927A-927A 3249 Part 1, Nov 16 2006.
2. Montini, Cesana, Manfred, Sanvito, Ponzoni, Sergi Sergi, Benedicenti, Bartholomae, Ambrosi, Di Serio, Doglioni, von Kalle, Naldini “Hematopoietic Stem Cell Gene Transfer in a Tumor-Prone Mouse Model Uncovers Low Genotoxicity of Lentiviral Vector Integration”, Nature Biotech; 2006 Jun;24(6).*
3. Mortellaro, Hernandez, Guerrini, Carlucci, Tabucchi, Ponzoni, Sanvito, Doglioni, Di Serio, Biasco, Follenzi, Naldini, Bordignon, Roncarolo, Aiuti, “Ex vivo Gene Therapy with Lentiviral Vectors Rescues Adenosine Deaminase (ADA)-Deficient Mice and Corrects their Immune and Metabolic Defects”, Blood, 2006, 108(9).
4. Mocellin, Hoon, Ambrosi, Nitti, Rossi, ”The Prognostic Value of Circulating Tumor Cells in Patients with Melanoma: a Systematic Review and Meta-analysis”, Clin Cancer Res. 2006 Aug 1;12(15):4605-13.
5. Mocellin, Ambrosi, Rossi, Montesco, Nitti, “Support Vector Machine Learning Model for Prediction of Sentinel Node Status in Patients with Cutaneus Melanoma”, Ann Surg Oncol. 2006 Jul 19.
6. Marchet, Belluco, D’Arrigo, Ambrosi, Mammano, Digito, Maino, Lise, Leon, Nitti, “Gene expression profiling of gastric cancer reveals a lymph node metastatic transcriptional fingerprint”, Ann Surg Oncol., 2006 Feb; 13(2S).
7. Terrazzino, Agostini, Pucciarelli, Pasetto, Friso, Ambrosi, Lisi, Leon, Lise, Nitti, “A Haplotype of the Methylenetetrahydrofolate Reductase Gene Predicts Poor Tumor Response in Rectal Cancer Patients Receiving Preoperative Chemoradiation”, Pharmacogenet Genomics. 2006 Nov;16(11):817-24.